Modelling & Simulation in Systems Pharmacology (SS 2014)
Organization
Time: every thursday 12:00-14:00
Requirement for course fullfillment (Studienleistung):
superwised work on one study topic each (1-2 research articles + 1 review), including a small programming task and presentation of the topic (incl. own achievements/results); ca 45-60 min + 15 min discussion.
Place: Arnimallee 6, SR 009
Detailed Schedule
17.04.14
Introduction & Overview ( slides )
Lecturer : Max von Kleist
24.04.14
Modelling Techniques & Pharmacokinetics ( slides, Codes )
Lecturer: Max von Kleist
08.05.14
Parameter Estimation ( slides , Codes )
Lecturer: Max von Kleist
15.05.14, 22.05.14, 05.06.14, 12.06.14, 19.06.14
project work & preparation
26.06.14
Drug absorption, physiologically based pharmacokinetics
Lecturer: Marco Phieler ( slides , Codes ), Johanna Tiemann ( slides , Codes )
03.07.14
Partition coefficients, parameter estimation
Lecturer: Ben hillmer ( slides , Codes ), Benjamin Strauch ( slides , Codes )
10.07.14
Disease Modelling I, Disease Modelling II
Lecturer: Alex Vowinkel ( slides , Codes ), Tino Schüllermann
17.07.14
ODE vs. stochastic simulation & Wrap-Up
Lecturer: Ivo Soares Parchao ( slides , Codes )
Study Topics
Physiologically Based Phramacokinetics
Johanna Tiemann
Appointments: 14.05.2014 11:00, 28.05.2014 11:00, 12.06.2014 16:00
Talk: 26.06.2014
Partition Coefficients
Ben Hillmer
Appointments: 15.05.2014 12:00, 05.06.2014 12:00, 26.06.2014 11:00
Talk: 03.07.2014
Parameter Estimation
Benjamin Strauch
Appointments: 15.05.2014 13:00, 11.06.2014 10:00, 23.06.2014 11:00, 30.06.2014 11:00,
Talk: 03.07.2014
Disease Modelling I: Glucocorticoid Receptor Dynamics
Alex Vowinkel
Appointments: 22.05.2014 11:00, 12.06.2014 11:00, 24.06.2014, 10:00, 04.07.2014 12:00
Talk: 10.07.2014
Disease Modelling II: HIV-1
Tino Schüllermann
Appointments: 22.05.2014 12:00, 12.06.2014 12:00
Talk: 10.07.2014
ODE vs. Stochastic Simulation
Ivo Soares Parchao
Appointments: 22.05.2014 13:00, 12.06.2014 13:00, 26.06.2014 10:00, 10.07.2014 10:00
Talk: 17.07.2014
Models of Drug Absorption
Marco Phieler
Appointments: 14.05.2014 10:00, 28.05.2014 10:00, 13.06.2014 16:00, 23.06.2014 12:00
Talk: 26.06.2014
Each project will we conducted by one student and presented during the seminar. Supervision/feedback from the project supervisors will be given at three distinct appointments.Supervision of Project Work
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- The first appointment is intended to clarify the tasks related to the study topic. The student is expected to be prepared in the sense that he/she has read the project portfolio or started the programming tasks and may have particular questions.
- The second appointment is intended to solve particular issues regarding e.g. the programming tasks, if any have arisen, or if the student is stuck. The student presents his/her achievements up to this time point and discusses ways to present the work and obtains feedback.
- The last appointment in intended to review the results and to abtain feedback from the supervisors regarding the presentation of the topic.
Useful advises for the preparation of scientific talks
- Please refer to the following list of useful advises ( in german).