• Numerics for Bioinformaticians (WS 16/17; 2+2 SWS)

    Organization

    Exam I: The first exam will take place on Wednesday 10:00-12:00, 15th February in Room 032, Arnimallee 6

    Results of the first Exam: here

    Exam II: The second exam will take place on Friday 10:00-12:00, 17th March in Room 025/026, Arnimallee 6

    Results of the second Exam: here

    Lectures: every Wednesday 10:00-11:30, R.025/026, Arnimallee 6

    Tutorial I: every Wednesday 12:30-14:00, R.017, Arnimallee 6

    Tutorial II: every Friday 10:15-11:45, R.017, Arnimallee 6

    please either visit Tutorial I or Tutorial II.

    Lecture notes: Lecture notes will be updated by the most recent lecture content in a cummulative fashion and can be found below under the most recent lecture.

    Excersises: Deadline is 10:00 at the day of the suceeding lecture (so 1 weeks after you received the sheets).

    Programming tasks: All programming tasks have to be ‘zipped’ and send to bioinfnumerik@hotmail.com, or maxkleist2@fu-berlin.de via email.

    Requirement for course fullfillment (Studienleistung):

    Lecture (19400601): active participation + written examination on 15th Feb.2016, 10:00-12:00; second examination 15th March, 10:00-12:00.

    Tutorials (19400602): active participation + > 50% of points in the exercises

    Detailed Schedule

    19.10.16

    Introduction & Overview

    26.10.16

    Modelling (Slides, Exercises)

    You can find a Python tutorial here.

    Matlab tutorials can be found here: basic, more extensive

    Reference solutions to the programming exercise: Matlab1, Matlab2, Python, R

    02.11.16

    Poisson Processes I (Notes, Exercises)

    Reference solutions to the programming exercise: Matlab

    09.11.16

    Poisson Processes II (Notes, Exercises)

    Reference solution to programming exercise: Matlab, Python

    16.11.16

    Poisson Processes -> ODEs (Notes, Exercises)

    Reference solution to programming exercise: Matlab

    23.11.16

    Integration I  (Notes, Exercises)

    30.11.16

    Integration II  (Notes (2-12-16), Exercises (corr. 07-12-16))

    07.12.16

    Solving ODEs I  (Notes(11-11-16), Exercises)

    Reference solutions to Exc.7 (Matlab)

    14.12.16

    Solving ODEs II  (Notes, Optional christmas exercises)

    14/17.12.16

    Phase Planes & Linear stability analysis  (Notes)

    —christmas & new year’s break—

    04.01.17

    Inverse Problems I  (Notes, Exercises)

    11.01.17

    Inverse Problems II  (Notes, Exercises)

    reference solution HW11, Exc. 2 (Matlab)

    18.01.17

    Solving Inverse Problems  (Notes, Exercises)

    reference solution to HW12, Exc.1 (Matlab)

    25.01.17

    Bayesian Inference I  (Notes, Exercises)

    ref. sol HW13, Exc 1, Exc 2, Exc 3

    01.02.17

    Bayesian Inference II (Notes)

    08.02.17

    Wrap-Up

    15.02.17

    Exam

    Comments to Programming tasks: Exc.1-4, Exc.5, Exc.6, Exc.7-10,Exc.11-end