• Numerics for Bioinformaticians (WS 18/19, 2+2 SWS)

    Organization

    Exam I: The first exam will take place on wednesday 10:15-11:45, 20th February in Room 0YY, Arnimallee 6

    Results of the first Exam: here

    Exam II: The second exam will take place on XXday XX:00-XX:00, XXth February in Room 0YY, Arnimallee 6

    Results of the second Exam: here

    Lectures: every Wednesday 10:00-11:30, R.025/026, Arnimallee 6

    Tutorial I: every Wednesday 14:00-15:30, R.019, Arnimallee 3-5

    Lecture notes: Lecture notes will be updated by the most recent lecture content in a cummulative fashion and can be found below under the most recent lecture.

    Excersises: Deadline is 10:00 at the day of the suceeding lecture (so 1 weeks after you received the sheets).

    Programming tasks: All programming tasks have to be ‘zipped’ and send to max.kleist2@fu-berlin.de.

    Requirement for course fullfillment (Studienleistung):

    Lecture (19400601): active participation + written examination on XYth Feb.2016, XX:00-XX:00; second examination XYth March, XX:00-XX:00.

    Tutorials (19400602): active participation + > 50% of points in the exercises

    Detailed Schedule

    17.10.18

    Introduction & Overview

    24.10.18

    Modelling (Slides, Exercises)

    You can find a Python tutorial here.

    Matlab tutorials can be found here: basic, more extensive

    Reference solutions to the programming exercise: Matlab1, Matlab2, Python, R

    31.10.18

    Poisson Processes I (Notes, Exercise)

    Reference solutions to the programming exercise: Matlab

    07.11.18

    Poisson Processes II (Notes, Exercises)

    Reference solution to programming exercise: Matlab, Python

    14.11.18

    Poisson Processes -> ODEs (Notes, Exercises)

    Reference solution to programming exercise: Matlab

    21.11.18

    Integration I  (Notes, Exercises)

    28.11.18

    Integration II  (Notes, Exercises)

    05.12.18

    Solving ODEs I  (Notes, Exercises)

    Reference solutions to Exc.7 (Matlab)

    12.12.18

    Phase Planes & Linear stability analysis  (Notes, Christmas Exercise)

    19.12.18

    Inverse Problems  (Notes, Exercises)

    —christmas & new year’s break—

    09.01.19

    Inverse Problems  (Notes, Exercises)

    16.01.19

    Bayesian Inference I  (Notes, Exercises)

    23.01.19

    Bayesian Inference II (Notes, Exercises)

    30.01.19

    Maximum Likelihood Estimation I  (Notes, Exercises)

    06.02.19

    Maximum Likelihood Estimation II  (Notes)

    13.02.19

    Wrap-Up

    20.02.19

    Exam