Organization

Exam I: The first exam will take place on Wednesday 10:00-12:00, 15th February in Room 032, Arnimallee 6

Results of the first Exam: here

Exam II: The second exam will take place on Friday 10:00-12:00, 17th March in Room 025/026, Arnimallee 6

Results of the second Exam: here

Lectures: every Wednesday 10:00-11:30, R.025/026, Arnimallee 6

Tutorial I: every Wednesday 12:30-14:00, R.017, Arnimallee 6

Tutorial II: every Friday 10:15-11:45, R.017, Arnimallee 6

please either visit Tutorial I or Tutorial II.

Lecture notes: Lecture notes will be updated by the most recent lecture content in a cummulative fashion and can be found below under the most recent lecture.

Excersises: Deadline is 10:00 at the day of the suceeding lecture (so 1 weeks after you received the sheets).

Programming tasks: All programming tasks have to be ‘zipped’ and send to bioinfnumerik@hotmail.com, or maxkleist2@fu-berlin.de via email.

Requirement for course fullfillment (Studienleistung):

Lecture (19400601): active participation + written examination on 15th Feb.2016, 10:00-12:00; second examination 15th March, 10:00-12:00.

Tutorials (19400602): active participation + > 50% of points in the exercises

Detailed Schedule

19.10.16

Introduction & Overview

26.10.16

Modelling (Slides, Exercises)

You can find a Python tutorial here.

Matlab tutorials can be found here: basic, more extensive

Reference solutions to the programming exercise: Matlab1, Matlab2, Python, R

02.11.16

Poisson Processes I (Notes, Exercises)

Reference solutions to the programming exercise: Matlab

09.11.16

Poisson Processes II (Notes, Exercises)

Reference solution to programming exercise: Matlab, Python

16.11.16

Poisson Processes -> ODEs (Notes, Exercises)

Reference solution to programming exercise: Matlab

23.11.16

Integration I  (Notes, Exercises)

30.11.16

Integration II  (Notes (2-12-16), Exercises (corr. 07-12-16))

07.12.16

Solving ODEs I  (Notes(11-11-16), Exercises)

Reference solutions to Exc.7 (Matlab)

14.12.16

Solving ODEs II  (Notes, Optional christmas exercises)

14/17.12.16

Phase Planes & Linear stability analysis  (Notes)

—christmas & new year’s break—

04.01.17

Inverse Problems I  (Notes, Exercises)

11.01.17

Inverse Problems II  (Notes, Exercises)

reference solution HW11, Exc. 2 (Matlab)

18.01.17

Solving Inverse Problems  (Notes, Exercises)

reference solution to HW12, Exc.1 (Matlab)

25.01.17

Bayesian Inference I  (Notes, Exercises)

ref. sol HW13, Exc 1, Exc 2, Exc 3

01.02.17

Bayesian Inference II (Notes)

08.02.17

Wrap-Up

15.02.17

Exam

Comments to Programming tasks: Exc.1-4, Exc.5, Exc.6, Exc.7-10,Exc.11-end