# Numerics for Bioinformaticians (WS 16/17; 2+2 SWS)

** Organization **

**Exam I: **The first exam will take place on Wednesday 10:00-12:00, 15th February in Room 032, Arnimallee 6

Results of the first Exam: here

**Exam II: **The second exam will take place on Friday 10:00-12:00, 17th March in Room 025/026, Arnimallee 6

Results of the second Exam: here

**Lectures: **every Wednesday 10:00-11:30, R.025/026, Arnimallee 6

**Tutorial I: **every Wednesday 12:30-14:00, R.017, Arnimallee 6

**Tutorial II: **every Friday 10:15-11:45, R.017, Arnimallee 6

please **either** visit Tutorial I **or** Tutorial II.

**Lecture notes: **Lecture notes will be updated by the most recent lecture content in a cummulative fashion and can be found below under the most recent lecture.

**Excersises:** Deadline is 10:00 at the day of the suceeding lecture (so 1 weeks after you received the sheets).

**Programming tasks**: All programming tasks have to be ‘zipped’ and send to bioinfnumerik@hotmail.com, or maxkleist2@fu-berlin.de via email.

**Requirement for course fullfillment (Studienleistung): **

Lecture (19400601): active participation + written examination on 15th Feb.2016, 10:00-12:00; second examination 15th March, 10:00-12:00.

Tutorials (19400602): active participation + > 50% of points in the exercises

** Detailed Schedule**

**19.10.16**

Introduction & Overview

**26.10.16**

Modelling (Slides, Exercises)

You can find a Python tutorial here.

Matlab tutorials can be found here: basic, more extensive

Reference solutions to the programming exercise: Matlab1, Matlab2, Python, R

**02.11.16**

Poisson Processes I (Notes, Exercises)

Reference solutions to the programming exercise: Matlab

**09.11.16**

Poisson Processes II (Notes, Exercises)

Reference solution to programming exercise: Matlab, Python

**16.11.16**

Poisson Processes -> ODEs (Notes, Exercises)

Reference solution to programming exercise: Matlab

**23.11.16**

Integration I (Notes, Exercises)

**30.11.16**

Integration II (Notes (2-12-16), Exercises (corr. 07-12-16))

**07.12.16**

Solving ODEs I (Notes(11-11-16), Exercises)

Reference solutions to Exc.7 (Matlab)

**14.12.16**

Solving ODEs II (Notes, Optional christmas exercises)

**14/17.12.16**

Phase Planes & Linear stability analysis (Notes)

—christmas & new year’s break—

**04.01.17**

Inverse Problems I (Notes, Exercises)

**11.01.17**

Inverse Problems II (Notes, Exercises)

reference solution HW11, Exc. 2 (Matlab)

**18.01.17**

Solving Inverse Problems (Notes, Exercises)

reference solution to HW12, Exc.1 (Matlab)

**25.01.17**

Bayesian Inference I (Notes, Exercises)

ref. sol HW13, Exc 1, Exc 2, Exc 3

**01.02.17**

Bayesian Inference II (Notes)

**08.02.17**

Wrap-Up

**15.02.17**

Exam

Comments to Programming tasks: Exc.1-4, Exc.5, Exc.6, Exc.7-10,Exc.11-end