Numerics for Bioinformaticians (WS 16/17; 2+2 SWS)
Organization
Exam I: The first exam will take place on Wednesday 10:00-12:00, 15th February in Room 032, Arnimallee 6
Results of the first Exam: here
Exam II: The second exam will take place on Friday 10:00-12:00, 17th March in Room 025/026, Arnimallee 6
Results of the second Exam: here
Lectures: every Wednesday 10:00-11:30, R.025/026, Arnimallee 6
Tutorial I: every Wednesday 12:30-14:00, R.017, Arnimallee 6
Tutorial II: every Friday 10:15-11:45, R.017, Arnimallee 6
please either visit Tutorial I or Tutorial II.
Lecture notes: Lecture notes will be updated by the most recent lecture content in a cummulative fashion and can be found below under the most recent lecture.
Excersises: Deadline is 10:00 at the day of the suceeding lecture (so 1 weeks after you received the sheets).
Programming tasks: All programming tasks have to be ‘zipped’ and send to bioinfnumerik@hotmail.com, or maxkleist2@fu-berlin.de via email.
Requirement for course fullfillment (Studienleistung):
Lecture (19400601): active participation + written examination on 15th Feb.2016, 10:00-12:00; second examination 15th March, 10:00-12:00.
Tutorials (19400602): active participation + > 50% of points in the exercises
Detailed Schedule
19.10.16
Introduction & Overview
26.10.16
Modelling (Slides, Exercises)
You can find a Python tutorial here.
Matlab tutorials can be found here: basic, more extensive
Reference solutions to the programming exercise: Matlab1, Matlab2, Python, R
02.11.16
Poisson Processes I (Notes, Exercises)
Reference solutions to the programming exercise: Matlab
09.11.16
Poisson Processes II (Notes, Exercises)
Reference solution to programming exercise: Matlab, Python
16.11.16
Poisson Processes -> ODEs (Notes, Exercises)
Reference solution to programming exercise: Matlab
23.11.16
Integration I (Notes, Exercises)
30.11.16
Integration II (Notes (2-12-16), Exercises (corr. 07-12-16))
07.12.16
Solving ODEs I (Notes(11-11-16), Exercises)
Reference solutions to Exc.7 (Matlab)
14.12.16
Solving ODEs II (Notes, Optional christmas exercises)
14/17.12.16
Phase Planes & Linear stability analysis (Notes)
—christmas & new year’s break—
04.01.17
Inverse Problems I (Notes, Exercises)
11.01.17
Inverse Problems II (Notes, Exercises)
reference solution HW11, Exc. 2 (Matlab)
18.01.17
Solving Inverse Problems (Notes, Exercises)
reference solution to HW12, Exc.1 (Matlab)
25.01.17
Bayesian Inference I (Notes, Exercises)
ref. sol HW13, Exc 1, Exc 2, Exc 3
01.02.17
Bayesian Inference II (Notes)
08.02.17
Wrap-Up
15.02.17
Exam
Comments to Programming tasks: Exc.1-4, Exc.5, Exc.6, Exc.7-10,Exc.11-end